| 2013 |
K Katoh, DM Standley |
MAFFT multiple sequence alignment software version 7: improvements in performance and usability |
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30, 772-780 |
11338 |
| 2002 |
K Katoh, K Misawa, K Kuma, T Miyata |
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform |
NUCLEIC ACIDS RESEARCH, 2002, 30, 3059-3066 |
7546 |
| 2005 |
K Katoh, K Kuma, H Toh, T Miyata |
MAFFT version 5: improvement in accuracy of multiple sequence alignment |
NUCLEIC ACIDS RESEARCH, 2005, 33, 511-518 |
3827 |
| 2008 |
K Katoh, H Toh |
Recent developments in the MAFFT multiple sequence alignment program |
BRIEFINGS IN BIOINFORMATICS, 2008, 9, 286-298 |
2921 |
| 2009 |
K Katoh, G Asimenos, H Toh |
Multiple alignment of DNA sequences with MAFFT |
BIOINFORMATICS FOR DNA SEQUENCE ANALYSIS, 2009, 39-64 |
960 |
| 2017 |
K Katoh, J Rozewicki, KD Yamada |
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization |
BRIEFINGS IN BIOINFORMATICS, 2017 |
620 |
| 2010 |
K Katoh, H Toh |
Parallelization of the MAFFT multiple sequence alignment program |
BIOINFORMATICS, 2010, 26, 1899-1900 |
543 |
| 2008 |
K Katoh, H Toh |
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework |
BMC BIOINFORMATICS, 2008, 9, 212-212 |
485 |
| 2015 |
I Sela, H Ashkenazy, K Katoh, T Pupko |
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters |
NUCLEIC ACIDS RESEARCH 43 (W1), W7-W, 2015, 14 |
267 |
| 2014 |
K Katoh, DM Standley |
MAFFT: iterative refinement and additional methods |
MULTIPLE SEQUENCE ALIGNMENT METHODS, 2014, 131-146 |
213 |
| 2004 |
N Iwabe, Y Hara, Y Kumazawa, K Shibamoto, Y Saito, T Miyata, K Katoh |
Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA–coded proteins |
MOLECULAR BIOLOGY AND EVOLUTION, 2004, 22, 810-813 |
184 |
| 2013 |
S Kuraku, CM Zmasek, O Nishimura, K Katoh |
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity |
NUCLEIC ACIDS RESEARCH 41 (W1), W22-W, 2013, 28 |
144 |
| 2016 |
K Katoh, DM Standley |
A simple method to control over-alignment in the MAFFT multiple sequence alignment program |
BIOINFORMATICS, 2016, 32, 1933-1942 |
142 |
| 2005 |
K Katoh, K Kuma, T Miyata, H Toh |
Improvement in the accuracy of multiple sequence alignment program MAFFT |
GENOME INFORMATICS, 2005, 16, 22-33 |
136 |
| 1999 |
S Kuraku, D Hoshiyama, K Katoh, H Suga, T Miyata |
Monophyly of lampreys and hagfishes supported by nuclear DNA–coded genes |
JOURNAL OF MOLECULAR EVOLUTION, 1999, 49, 729-735 |
128 |
| 2012 |
K Katoh, MC Frith |
Adding unaligned sequences into an existing alignment using MAFFT and LAST |
BIOINFORMATICS, 2012, 28, 3144-3146 |
120 |
| 2016 |
KD Yamada, K Tomii, K Katoh |
Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees |
BIOINFORMATICS, 2016, 32, 3246-3251 |
113 |
| 2004 |
K Kikugawa, K Katoh, S Kuraku, H Sakurai, O Ishida, N Iwabe, T Miyata |
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes |
BMC BIOLOGY, 2004, 2, 3-3 |
109 |
| 2001 |
K Katoh, K Kuma, T Miyata |
Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny |
JOURNAL OF MOLECULAR EVOLUTION 53 (4-5), 2001, 477-484 |
84 |
| 2006 |
K Katoh, H Toh |
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences |
BIOINFORMATICS, 2006, 23, 372-374 |
83 |
| 2009 |
CB Do, K Katoh |
Protein multiple sequence alignment |
FUNCTIONAL PROTEOMICS, 2009, 379-413 |
74 |
| 1999 |
H Suga, D Hoshiyama, S Kuraku, K Katoh, K Kubokawa, T Miyata |
Protein tyrosine kinase cDNAs from amphioxus, hagfish, and lamprey: isoform duplications around the divergence of cyclostomes and gnathostomes |
JOURNAL OF MOLECULAR EVOLUTION, 1999, 49, 601-608 |
70 |
| 2018 |
T Nakamura, KD Yamada, K Tomii, K Katoh |
Parallelization of MAFFT for large-scale multiple sequence alignments |
BIOINFORMATICS, 2018, 1, 3-3 |
69 |
| 2003 |
B Werding, A Hiller, R Lemaitre |
Geographic and depth distributional patterns of western Atlantic Porcellanidae (Crustacea: Decapoda: Anomura), with an updated list of species |
MEMOIRS OF MUSEUM VICTORIA, 2003 |
55 |
| 2008 |
M Koyanagi, T Nagata, K Katoh, S Yamashita, F Tokunaga |
Molecular evolution of arthropod color vision deduced from multiple opsin genes of jumping spiders |
JOURNAL OF MOLECULAR EVOLUTION, 2008, 66, 130-137 |
52 |
| 2001 |
RK Koduri, JT Miller, P Thammana |
An efficient homologous recombination vector pTV (I) contains a hot spot for increased recombinant protein expression in Chinese hamster ovary cells |
GENE 280 (1-2), 2001, 87-95 |
51 |
| 2001 |
H Suga, K Katoh, T Miyata |
Sponge homologs of vertebrate protein tyrosine kinases and frequent domain shufflings in the early evolution of animals before the parazoan–eumetazoan split |
GENE 280 (1-2), 2001, 195-201 |
46 |
| 2007 |
G Sasaki, K Katoh, N Hirose, H Suga, K Kuma, T Miyata, ZH Su |
Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene … |
GENE 401 (1-2), 2007, 135-144 |
38 |
| 2005 |
JD Thompson, SR Holbrook, K Katoh, P Koehl, D Moras, E Westhof, ... |
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences |
NUCLEIC ACIDS RESEARCH, 2005, 33, 4164-4171 |
35 |
| 1999 |
K Katoh, T Miyata |
A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX‐3 origin of the testis‐determining gene SRY |
FEBS LETTERS 463 (1-2), 1999, 129-132 |
34 |
| 2000 |
K Ono-Koyanagi, H Suga, K Katoh, T Miyata |
Protein tyrosine phosphatases from amphioxus, hagfish, and ray: divergence of tissue-specific isoform genes in the early evolution of vertebrates |
JOURNAL OF MOLECULAR EVOLUTION, 2000, 50, 302-311 |
31 |
| 2015 |
N Fukushima, S Ishii, T Tsujiuchi, N Kagawa, K Katoh |
Comparative analyses of lysophosphatidic acid receptor-mediated signaling |
CELLULAR AND MOLECULAR LIFE SCIENCES, 2015, 72, 2377-2394 |
22 |
| 2019 |
J Rozewicki, S Li, KM Amada, DM Standley, K Katoh |
MAFFT-DASH: integrated protein sequence and structural alignment |
NUCLEIC ACIDS RESEARCH, 2019 |
8 |
| 2002 |
K Katoh, T Miyata |
Cyclostome hemoglobins are possibly paralogous to gnathostome hemoglobins |
JOURNAL OF MOLECULAR EVOLUTION, 2002, 55, 246-249 |
8 |
| 2019 |
J Sone, S Mitsuhashi, A Fujita, T Mizuguchi, K Hamanaka, K Mori, H Koike, ... |
Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease |
NATURE GENETICS, 2019, 1 |
4 |
| 2014 |
Y Morimoto, S Ishii, J Ishibashi, K Katoh, T Tsujiuchi, N Kagawa, ... |
Functional lysophosphatidic acid receptors expressed in Oryzias latipes |
GENE, 2014, 551, 189-200 |
3 |
| 2019 |
D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... |
Repertoire Builder: high-throughput structural modeling of B and T cell receptors |
MOLECULAR SYSTEMS DESIGN & ENGINEERING, 2019 |
2 |
| 2019 |
S Li, J Wilamowski, S Teraguchi, FJ van Eerden, J Rozewicki, A Davila, ... |
Structural modeling of lymphocyte receptors and their antigens |
IN VITRO DIFFERENTIATION OF T-CELLS, 2019, 207-229 |
1 |
| 2014 |
K Yamada, K Katoh, K Tomii |
1P267 application of novel amino acid substitution matrix, MIQS, to the mafft multiple sequence aligner (22c. Bioinformatics: Comparative genomics, poster, the 52nd annual … |
SEIBUTSU BUTSURI 54 (SUPPLEMENT1-2), S, 2014, 185 |
1 |
| 2019 |
S Mitsuhashi, S Ohori, K Katoh, MC Frith, N Matsumoto |
A method for complete characterization of complex germline rearrangements from long DNA reads |
MEDRXIV, 2019, 19006379 |
0 |
| 2017 |
D Schritt, K Katoh, S Li, DM Standley |
Modeling Biocatalysts |
FUTURE DIRECTIONS IN BIOCATALYSIS, 2017, 385-398 |
0 |
| 2015 |
K Takahashi, K Katoh, N Iwabe |
Phylogenetic position of ctenophores and early evolution of metazoans |
GENES & GENETIC SYSTEMS, 2015, 90, 394-394 |
0 |
| 2014 |
K Takahashi, K Katoh, N Iwabe |
Molecular phylogenetic analyses of deuterostomes: evolutionary position of cephalochordates |
GENES & GENETIC SYSTEMS, 2014, 89, 312-312 |
0 |
| 2011 |
N Iwabe, K Katoh, H Toh, G Sasaki, H Suga, H Nishiyori, N Hirose, ... |
A study of the evolution of metazoan multicellularity based on comparative genomic analysis: II. Diversification of gene family members |
GENES & GENETIC SYSTEMS, 2011, 86, 418-418 |
0 |
| 2011 |
K Kuma, K Katoh, H Toh, G Sasaki, A Fujiyama, T Miyata, N Iwabe |
A study of the evolution of metazoan multicellularity based on comparative genomic analysis: I. Comprehensive genome comparison of metazoans, choanoflagellates, and other organisms |
GENES & GENETIC SYSTEMS, 2011, 86, 418-418 |
0 |
| 2009 |
K Kuma, N Iwabe, K Katoh, H Toh, N Hirose, G Sasaki, H Suga, T Miyata, ... |
Genome sequencing project of a choanoflagellate, Monosiga ovata: I. Genome structure |
GENES & GENETIC SYSTEMS, 2009, 84, 449-449 |
0 |
| 2009 |
N Iwabe, K Kuma, K Katoh, H Toh, N Hirose, G Sasaki, Y Murata, H Suga, ... |
Genome sequencing project of a choanoflagellate, Monosiga ovata: II. Divergence patterns of gene family members in the early evolution of animals |
GENES & GENETIC SYSTEMS, 2009, 84, 450-450 |
0 |
| 2006 |
H Oda, H Toh, K Katoh |
2P073 Quantitative analysis of conservation of amino acid residues critical for protein-protein interaction (30. Protein function (II), Poster Session, Abstract, Meeting … |
SEIBUTSU BUTSURI 46 (SUPPLEMENT2), S, 2006, 314 |
0 |
| 2006 |
H ICHIHARA, TD SATO, D HOSHIYAMA, K KOJIMA, W NEMOTO, ... |
Bioinformatics Center |
ICR ANNUAL REPORT, 2006, 12, 66-67 |
0 |
| 2001 |
M Koyanagi, K Katoh, N Iwabe, A Terakita, Y Shichida, K Kubokawa, ... |
CHARACTERIZATION OF CDNA CLONES ENCODING PHOTORECEPTOR PROTEIN (OPSIN) FROM CEPHALOCHORDATE LANCELET (Physiology)(Proceeding of the Seventy-Third Annual Meeting of the … |
ZOOLOGICAL SCIENCE, 2001, 18, 110-110 |
0 |
