Kazutaka Katoh
 |
Kazutaka Katoh Associate Professor katoh [at] biken.osaka-u.ac.jp |
Publications
| Year | Authors | Title | Publication | Cites |
|---|---|---|---|---|
| 2020 | H Nakamura, H Doi, S Mitsuhashi, S Miyatake, K Katoh, MC Frith, T Asano, ... | Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS | JOURNAL OF HUMAN GENETICS, 2020, 65, 475-480 | 3 |
| 2020 | M Lei, D Liang, Y Yang, S Mitsuhashi, K Katoh, N Miyake, MC Frith, L Wu, ... | Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer–Giedion syndrome and Cornelia de Lange syndrome-4 | JOURNAL OF HUMAN GENETICS, 2020, 1-8 | 2 |
| 2020 | S Mitsuhashi, S Ohori, K Katoh, MC Frith, N Matsumoto | A pipeline for complete characterization of complex germline rearrangements from long DNA reads | GENOME MEDICINE, 2020, 12, 1-17 | 0 |
| 2020 | DS Saputri, S Li, FJ Van Eerden, J Rozewicki, Z Xu, HS Ismanto, A Davila, ... | Flexible, functional and familiar: characteristics of SARS-CoV-2 spike protein evolution | FRONTIERS IN MICROBIOLOGY, 2020, 11, 2112-2112 | 0 |
| 2019 | K Katoh, J Rozewicki, KD Yamada | MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization | BRIEFINGS IN BIOINFORMATICS, 2019, 20, 1160-1166 | 1262 |
| 2019 | J Rozewicki, S Li, KM Amada, DM Standley, K Katoh | MAFFT-DASH: integrated protein sequence and structural alignment | NUCLEIC ACIDS RESEARCH 47 (W1), W5-W, 2019, 10 | 52 |
| 2019 | J Sone, S Mitsuhashi, A Fujita, T Mizuguchi, K Hamanaka, K Mori, H Koike, ... | Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease | NATURE GENETICS, 2019, 51, 1215-1221 | 49 |
| 2019 | D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... | Repertoire builder: high-throughput structural modeling of B and T cell receptors | MOLECULAR SYSTEMS DESIGN & ENGINEERING, 2019, 4, 761-768 | 10 |
| 2019 | S Li, J Wilamowski, S Teraguchi, FJ van Eerden, J Rozewicki, A Davila, ... | Structural modeling of lymphocyte receptors and their antigens | IN VITRO DIFFERENTIATION OF T-CELLS, 2019, 207-229 | 2 |
| 2019 | S Mitsuhashi, S Ohori, K Katoh, MC Frith, N Matsumoto | A method for complete characterization of complex germline rearrangements from long DNA reads | MEDRXIV, 2019, 19006379 | 0 |
| 2018 | T Nakamura, KD Yamada, K Tomii, K Katoh | Parallelization of MAFFT for large-scale multiple sequence alignments | BIOINFORMATICS, 2018, 1, 3-3 | 176 |
| 2017 | D Schritt, K Katoh, S Li, DM Standley | Modeling Biocatalysts | FUTURE DIRECTIONS IN BIOCATALYSIS, 2017, 385-398 | 0 |
| 2016 | K Katoh, DM Standley | A simple method to control over-alignment in the MAFFT multiple sequence alignment program | BIOINFORMATICS, 2016, 32, 1933-1942 | 213 |
| 2016 | KD Yamada, K Tomii, K Katoh | Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees | BIOINFORMATICS, 2016, 32, 3246-3251 | 145 |
| 2015 | I Sela, H Ashkenazy, K Katoh, T Pupko | GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters | NUCLEIC ACIDS RESEARCH 43 (W1), W7-W, 2015, 14 | 359 |
| 2015 | N Fukushima, S Ishii, T Tsujiuchi, N Kagawa, K Katoh | Comparative analyses of lysophosphatidic acid receptor-mediated signaling | CELLULAR AND MOLECULAR LIFE SCIENCES, 2015, 72, 2377-2394 | 27 |
| 2015 | K Takahashi, K Katoh, N Iwabe | Phylogenetic position of ctenophores and early evolution of metazoans | GENES & GENETIC SYSTEMS, 2015, 90, 394-394 | 0 |
| 2014 | K Katoh, DM Standley | MAFFT: iterative refinement and additional methods | MULTIPLE SEQUENCE ALIGNMENT METHODS, 2014, 131-146 | 265 |
| 2014 | Y Morimoto, S Ishii, J Ishibashi, K Katoh, T Tsujiuchi, N Kagawa, ... | Functional lysophosphatidic acid receptors expressed in Oryzias latipes | GENE, 2014, 551, 189-200 | 3 |
| 2014 | K Yamada, K Katoh, K Tomii | 1P267 application of novel amino acid substitution matrix, MIQS, to the mafft multiple sequence aligner (22c. Bioinformatics: Comparative genomics, poster, the 52nd annual … | SEIBUTSU BUTSURI 54 (SUPPLEMENT1-2), S, 2014, 185 | 1 |
| 2014 | K Takahashi, K Katoh, N Iwabe | Molecular phylogenetic analyses of deuterostomes: evolutionary position of cephalochordates | GENES & GENETIC SYSTEMS, 2014, 89, 312-312 | 0 |
| 2013 | K Katoh, DM Standley | MAFFT multiple sequence alignment software version 7: improvements in performance and usability | MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30, 772-780 | 15216 |
| 2013 | S Kuraku, CM Zmasek, O Nishimura, K Katoh | aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity | NUCLEIC ACIDS RESEARCH 41 (W1), W22-W, 2013, 28 | 224 |
| 2012 | K Katoh, MC Frith | Adding unaligned sequences into an existing alignment using MAFFT and LAST | BIOINFORMATICS, 2012, 28, 3144-3146 | 144 |
| 2011 | N Iwabe, K Katoh, H Toh, G Sasaki, H Suga, H Nishiyori, N Hirose, ... | A study of the evolution of metazoan multicellularity based on comparative genomic analysis: II. Diversification of gene family members | GENES & GENETIC SYSTEMS, 2011, 86, 418-418 | 0 |
