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Songling Li Associate Professor slli [at] biken.osaka-u.ac.jp |
Shanghai Jiao Tong University (SJTU), B.Sc. in Biotechnology
Shanghai Jiao Tong University (SJTU), M.Sc. in Cell Biology
University of Heidelberg, Germany, Ph.D. in Physics
Structural biology, Molecular dynamics (MD) simulation, Immune repertoire analysis
Year | Authors | Title | Publication | Cites |
---|---|---|---|---|
2009 | S Li, H Li, M Li, Y Shyr, L Xie, Y Li | Improved prediction of lysine acetylation by support vector machines | PROTEIN AND PEPTIDE LETTERS, 2009, 16, 977-983 | 91 |
2012 | M Fritsche, S Li, DW Heermann, PA Wiggins | A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation | NUCLEIC ACIDS RESEARCH, 2012, 40, 972-980 | 73 |
2019 | J Rozewicki, S Li, KM Amada, DM Standley, K Katoh | MAFFT-DASH: integrated protein sequence and structural alignment | NUCLEIC ACIDS RESEARCH 47 (W1), W5-W, 2019, 10 | 52 |
2017 | KK Nyati, K Masuda, MMU Zaman, PK Dubey, D Millrine, JP Chalise, ... | TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a | NUCLEIC ACIDS RESEARCH, 2017, 45, 2687-2703 | 50 |
2014 | S Li, K Yamashita, KM Amada, DM Standley | Quantifying sequence and structural features of protein–RNA interactions | NUCLEIC ACIDS RESEARCH, 2014, 42, 10086-10098 | 34 |
2017 | R Yonehara, S Nada, T Nakai, M Nakai, A Kitamura, A Ogawa, ... | Structural basis for the assembly of the Ragulator-Rag GTPase complex | NATURE COMMUNICATIONS, 2017, 8, 1-11 | 30 |
2018 | H Hanieh, K Masuda, H Metwally, JP Chalise, M Mohamed, KK Nyati, ... | Arid5a stabilizes OX40 mRNA in murine CD4+ T cells by recognizing a stem‐loop structure in its 3′UTR | EUROPEAN JOURNAL OF IMMUNOLOGY, 2018, 48, 593-604 | 17 |
2017 | S Sakakibara, T Arimori, K Yamashita, H Jinzai, D Motooka, S Nakamura, ... | Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus | SCIENTIFIC REPORTS, 2017, 7, 1-14 | 14 |
2019 | D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... | Repertoire builder: high-throughput structural modeling of B and T cell receptors | MOLECULAR SYSTEMS DESIGN & ENGINEERING, 2019, 4, 761-768 | 10 |
2013 | S Li, DW Heermann | Transcriptional regulatory network shapes the genome structure of Saccharomyces cerevisiae | NUCLEUS, 2013, 4, 216-228 | 9 |
2015 | D Hall, S Li, K Yamashita, R Azuma, JA Carver, DM Standley | RNA–LIM: A novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure | ANALYTICAL BIOCHEMISTRY, 2015, 472, 52-61 | 4 |
2019 | Z Xu, S Li, J Rozewicki, K Yamashita, S Teraguchi, T Inoue, R Shinnakasu, ... | Functional clustering of B cell receptors using sequence and structural features | MOLECULAR SYSTEMS DESIGN & ENGINEERING, 2019, 4, 769-778 | 3 |
2014 | D Hall, S Li, K Yamashita, R Azuma, JA Carver, DM Standley | A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein | BIOPHYSICAL CHEMISTRY, 2014, 190, 50-55 | 3 |
2020 | H Metwally, T Tanaka, S Li, G Parajuli, S Kang, H Hanieh, S Hashimoto, ... | Noncanonical STAT1 phosphorylation expands its transcriptional activity into promoting LPS-induced IL-6 and IL-12p40 production | SCIENCE SIGNALING, 2020, 13 | 2 |
2020 | K Fukushima, T Satoh, F Sugihara, Y Sato, T Okamoto, Y Mitsui, S Yoshio, ... | Dysregulated Expression of the Nuclear Exosome Targeting Complex Component Rbm7 in Nonhematopoietic Cells Licenses the Development of Fibrosis | IMMUNITY 52 (3), 542-556., 2020, 13 | 2 |
2019 | H Fukuda, S Li, L Sardo, JL Smith, K Yamashita, AD Sarca, K Shirakawa, ... | Structural Determinants of the APOBEC3G N-terminal domain for HIV-1 RNA association | FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2019, 9, 129-129 | 2 |
2019 | S Li, J Wilamowski, S Teraguchi, FJ van Eerden, J Rozewicki, A Davila, ... | Structural modeling of lymphocyte receptors and their antigens | IN VITRO DIFFERENTIATION OF T-CELLS, 2019, 207-229 | 2 |
2013 | S Li, DW Heermann | Using chimaeric expression sequence tag as the reference to identify three-dimensional chromosome contacts | DNA RESEARCH, 2013, 20, 45-53 | 2 |
2020 | S Teraguchi, DS Saputri, MA Llamas-Covarrubias, A Davila, D Diez, ... | Methods for sequence and structural analysis of B and T cell receptor repertoires | COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2020 | 0 |
2020 | DS Saputri, S Li, FJ Van Eerden, J Rozewicki, Z Xu, HS Ismanto, A Davila, ... | Flexible, functional and familiar: characteristics of SARS-CoV-2 spike protein evolution | FRONTIERS IN MICROBIOLOGY, 2020, 11, 2112-2112 | 0 |
2019 | DM Standley, JDO Nieri, S Li, D Schritt, K Yamashita | Immunological entity clustering software | US PATENT APP. 16/333,875, 2019 | 0 |
2017 | D Schritt, K Katoh, S Li, DM Standley | Modeling Biocatalysts | FUTURE DIRECTIONS IN BIOCATALYSIS, 2017, 385-398 | 0 |