2013 |
K Katoh, DM Standley |
MAFFT multiple sequence alignment software version 7: improvements in performance and usability |
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30, 772-780 |
15216 |
2010 |
T Satoh, O Takeuchi, A Vandenbon, K Yasuda, Y Tanaka, Y Kumagai, ... |
The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection |
NATURE IMMUNOLOGY, 2010, 11, 936-944 |
862 |
2009 |
K Matsushita, O Takeuchi, DM Standley, Y Kumagai, T Kawagoe, ... |
Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay |
NATURE, 2009, 458, 1185-1190 |
458 |
2014 |
K Katoh, DM Standley |
MAFFT: iterative refinement and additional methods |
MULTIPLE SEQUENCE ALIGNMENT METHODS, 2014, 131-146 |
265 |
2009 |
M Yamamoto, DM Standley, S Takashima, H Saiga, M Okuyama, ... |
A single polymorphic amino acid on Toxoplasma gondii kinase ROP16 determines the direct and strain-specific activation of Stat3 |
JOURNAL OF EXPERIMENTAL MEDICINE, 2009, 206, 2747-2760 |
227 |
2011 |
A Kitamura, Y Maekawa, H Uehara, K Izumi, I Kawachi, M Nishizawa, ... |
A mutation in the immunoproteasome subunit PSMB8 causes autoinflammation and lipodystrophy in humans |
THE JOURNAL OF CLINICAL INVESTIGATION, 2011, 121, 4150-4160 |
222 |
2016 |
K Katoh, DM Standley |
A simple method to control over-alignment in the MAFFT multiple sequence alignment program |
BIOINFORMATICS, 2016, 32, 1933-1942 |
213 |
2013 |
T Uehata, H Iwasaki, A Vandenbon, K Matsushita, E Hernandez-Cuellar, ... |
Malt1-Induced Cleavage of Regnase-1 in CD4+ Helper T Cells Regulates Immune Activation |
CELL, 2013, 153, 1036-1049 |
212 |
2011 |
H Iwasaki, O Takeuchi, S Teraguchi, K Matsushita, T Uehata, K Kuniyoshi, ... |
The IκB kinase complex regulates the stability of cytokine-encoding mRNA induced by TLR–IL-1R by controlling degradation of regnase-1 |
NATURE IMMUNOLOGY, 2011, 12, 1167-1175 |
195 |
2015 |
T Mino, Y Murakawa, A Fukao, A Vandenbon, HH Wessels, D Ori, ... |
Regnase-1 and roquin regulate a common element in inflammatory mRNAs by spatiotemporally distinct mechanisms |
CELL, 2015, 161, 1058-1073 |
188 |
2011 |
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... |
Community-wide assessment of protein-interface modeling suggests improvements to design methodology |
JOURNAL OF MOLECULAR BIOLOGY, 2011, 414, 289-302 |
133 |
2012 |
AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ... |
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format |
NUCLEIC ACIDS RESEARCH 40 (D1), D453-D, 2012, 460 |
123 |
2009 |
T Schwede, A Sali, B Honig, M Levitt, HM Berman, D Jones, SE Brenner, ... |
Outcome of a workshop on applications of protein models in biomedical research |
STRUCTURE, 2009, 17, 151-159 |
122 |
2010 |
S Liang, D Zheng, DM Standley, B Yao, M Zacharias, C Zhang |
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results |
BMC BIOINFORMATICS, 2010, 11, 1-6 |
117 |
2014 |
N Takemura, T Kawasaki, J Kunisawa, S Sato, A Lamichhane, ... |
Blockade of TLR3 protects mice from lethal radiation-induced gastrointestinal syndrome |
NATURE COMMUNICATIONS, 2014, 5, 1-15 |
98 |
2014 |
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... |
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation |
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, 2014, 111, 5289-5294 |
95 |
2013 |
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... |
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions |
PROTEINS: STRUCTURE, FUNCTION, AND BIOINFORMATICS, 2013, 81, 1980-1987 |
92 |
2014 |
S Tartey, K Matsushita, A Vandenbon, D Ori, T Imamura, T Mino, ... |
Akirin2 is critical for inducing inflammatory genes by bridging IκB‐ζ and the SWI/SNF complex |
THE EMBO JOURNAL, 2014, 33, 2332-2348 |
59 |
2012 |
K Maruyama, M Fukasaka, A Vandenbon, T Saitoh, T Kawasaki, T Kondo, ... |
The transcription factor Jdp2 controls bone homeostasis and antibacterial immunity by regulating osteoclast and neutrophil differentiation |
IMMUNITY, 2012, 37, 1024-1036 |
58 |
2019 |
J Rozewicki, S Li, KM Amada, DM Standley, K Katoh |
MAFFT-DASH: integrated protein sequence and structural alignment |
NUCLEIC ACIDS RESEARCH 47 (W1), W5-W, 2019, 10 |
52 |
2017 |
KK Nyati, K Masuda, MMU Zaman, PK Dubey, D Millrine, JP Chalise, ... |
TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a |
NUCLEIC ACIDS RESEARCH, 2017, 45, 2687-2703 |
50 |
2013 |
Y Enokizono, H Kumeta, K Funami, M Horiuchi, J Sarmiento, K Yamashita, ... |
Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling |
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, 2013, 110, 19908-19913 |
49 |
2010 |
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... |
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows |
JOURNAL OF BIOMEDICAL SEMANTICS, 2010, 1, 8-8 |
49 |
2007 |
DM Standley, H Toh, H Nakamura |
ASH structure alignment package: sensitivity and selectivity in domain classification |
BMC BIOINFORMATICS, 2007, 8, 116-116 |
47 |
2014 |
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... |
Blind prediction of interfacial water positions in CAPRI |
PROTEINS: STRUCTURE, FUNCTION, AND BIOINFORMATICS, 2014, 82, 620-632 |
44 |
2008 |
DM Standley, AR Kinjo, K Kinoshita, H Nakamura |
Protein structure databases with new web services for structural biology and biomedical research |
BRIEFINGS IN BIOINFORMATICS, 2008, 9, 276-285 |
44 |
2016 |
K Masuda, B Ripley, KK Nyati, PK Dubey, MMU Zaman, H Hanieh, M Higa, ... |
Arid5a regulates naive CD4+ T cell fate through selective stabilization of Stat3 mRNA |
JOURNAL OF EXPERIMENTAL MEDICINE, 2016, 213, 605-619 |
43 |
2015 |
M Onishi, K Ozasa, K Kobiyama, K Ohata, M Kitano, K Taniguchi, ... |
Hydroxypropyl-β-cyclodextrin spikes local inflammation that induces Th2 cell and T follicular helper cell responses to the coadministered antigen |
THE JOURNAL OF IMMUNOLOGY, 2015, 194, 2673-2682 |
42 |
2014 |
H Shirai, K Ikeda, K Yamashita, Y Tsuchiya, J Sarmiento, S Liang, ... |
High‐resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations |
PROTEINS: STRUCTURE, FUNCTION, AND BIOINFORMATICS, 2014, 82, 1624-1635 |
42 |
2014 |
K Yamashita, K Ikeda, K Amada, S Liang, Y Tsuchiya, H Nakamura, ... |
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies |
BIOINFORMATICS, 2014, 30, 3279-3280 |
39 |
2013 |
T Kawasaki, N Takemura, DM Standley, S Akira, T Kawai |
The second messenger phosphatidylinositol-5-phosphate facilitates antiviral innate immune signaling |
CELL HOST & MICROBE, 2013, 14, 148-158 |
38 |
2011 |
S Liang, D Zheng, C Zhang, DM Standley |
Fast and accurate prediction of protein side-chain conformations |
BIOINFORMATICS, 2011, 27, 2913-2914 |
38 |
2010 |
K Zhuo, R Cui, WM Ye, M Luo, H Wang, X Hu, J Liao |
Morphological and molecular characterization of Aphelenchoides fujianensis n. sp.(Nematoda: Aphelenchoididae) from Pinus massoniana in China |
ZOOTAXA, 2010, 2509, 39-52 |
36 |
2011 |
M Fernandez, Y Kumagai, DM Standley, A Sarai, K Mizuguchi, S Ahmad |
Prediction of dinucleotide-specific RNA-binding sites in proteins |
BMC BIOINFORMATICS 12 (S13), S, 2011, 5 |
35 |
2017 |
M Sasai, N Sakaguchi, JS Ma, S Nakamura, T Kawabata, H Bando, Y Lee, ... |
Essential role for GABARAP autophagy proteins in interferon-inducible GTPase-mediated host defense |
NATURE IMMUNOLOGY, 2017, 18, 899-899 |
34 |
2014 |
S Li, K Yamashita, KM Amada, DM Standley |
Quantifying sequence and structural features of protein–RNA interactions |
NUCLEIC ACIDS RESEARCH, 2014, 42, 10086-10098 |
34 |
2017 |
R Yonehara, S Nada, T Nakai, M Nakai, A Kitamura, A Ogawa, ... |
Structural basis for the assembly of the Ragulator-Rag GTPase complex |
NATURE COMMUNICATIONS, 2017, 8, 1-11 |
30 |
2011 |
S Liang, Y Zhou, N Grishin, DM Standley |
Protein side chain modeling with orientation‐dependent atomic force fields derived by series expansions |
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2011, 32, 1680-1686 |
30 |
2007 |
E Kanamori, Y Murakami, Y Tsuchiya, DM Standley, H Nakamura, ... |
Docking of protein molecular surfaces with evolutionary trace analysis |
PROTEINS: STRUCTURE, FUNCTION, AND BIOINFORMATICS, 2007, 69, 832-838 |
29 |
2012 |
A Vandenbon, S Teraguchi, S Akira, K Takeda, DM Standley |
Systems biology approaches to toll‐like receptor signaling |
WILEY INTERDISCIPLINARY REVIEWS: SYSTEMS BIOLOGY AND MEDICINE, 2012, 4, 497-507 |
28 |
2016 |
M Yokogawa, T Tsushima, NN Noda, H Kumeta, Y Enokizono, ... |
Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions |
SCIENTIFIC REPORTS, 2016, 6, 1-10 |
24 |
2014 |
Y Furukawa, S Teraguchi, T Ikegami, O Dagliyan, L Jin, D Hall, ... |
Intrinsic disorder mediates cooperative signal transduction in STIM1 |
JOURNAL OF MOLECULAR BIOLOGY, 2014, 426, 2082-2097 |
24 |
2011 |
J Ikebe, DM Standley, H Nakamura, J Higo |
Ab initio simulation of a 57‐residue protein in explicit solvent reproduces the native conformation in the lowest free‐energy cluster |
PROTEIN SCIENCE, 2011, 20, 187-196 |
24 |
2008 |
K Hamblin, DM Standley, MB Rogers, A Stechmann, AJ Roger, R Maytum, ... |
Localization and nucleotide specificity of Blastocystis succinyl‐CoA synthetase |
MOLECULAR MICROBIOLOGY, 2008, 68, 1395-1405 |
24 |
2015 |
J Ohshima, M Sasai, J Liu, K Yamashita, JS Ma, Y Lee, H Bando, ... |
RabGDIα is a negative regulator of interferon-γ–inducible GTPase-dependent cell-autonomous immunity to Toxoplasma gondii |
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 112 (33), E4581-, 2015, 4590 |
21 |
2011 |
YH Lee, T Ikegami, DM Standley, K Sakurai, T Hase, Y Goto |
Binding Energetics of Ferredoxin‐NADP+ Reductase with Ferredoxin and Its Relation to Function |
CHEMBIOCHEM, 2011, 12, 2062-2070 |
21 |
2016 |
Y Kamikawa, Y Hori, K Yamashita, L Jin, S Hirayama, DM Standley, ... |
Design of a protein tag and fluorogenic probe with modular structure for live-cell imaging of intracellular proteins |
CHEMICAL SCIENCE, 2016, 7, 308-314 |
19 |
2018 |
H Hanieh, K Masuda, H Metwally, JP Chalise, M Mohamed, KK Nyati, ... |
Arid5a stabilizes OX40 mRNA in murine CD4+ T cells by recognizing a stem‐loop structure in its 3′UTR |
EUROPEAN JOURNAL OF IMMUNOLOGY, 2018, 48, 593-604 |
17 |
2016 |
T Kouwaki, T Okamoto, A Ito, Y Sugiyama, K Yamashita, T Suzuki, ... |
Hepatocyte factor JMJD5 regulates hepatitis B virus replication through interaction with HBx |
JOURNAL OF VIROLOGY, 2016, 90, 3530-3542 |
17 |
2013 |
S Liang, D Zheng, DM Standley, H Guo, C Zhang |
A novel function prediction approach using protein overlap networks |
BMC SYSTEMS BIOLOGY, 2013, 7, 61-61 |
17 |
2013 |
AJ Hobro, DM Standley, S Ahmad, NI Smith |
Deconstructing RNA: optical measurement of composition and structure |
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2013, 15, 13199-13208 |
17 |
2011 |
M Lis, T Kim, JJ Sarmiento, D Kuroda, HV Dinh, AR Kinjo, K Amada, ... |
Bridging the gap between single-template and fragment based protein structure modeling using Spanner |
IMMUNOME RESEARCH, 2011, 7, 1-1 |
17 |
2019 |
K Takeda, S Sakakibara, K Yamashita, D Motooka, S Nakamura, ... |
Allergic conversion of protective mucosal immunity against nasal bacteria in patients with chronic rhinosinusitis with nasal polyposis |
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY 143 (3), 1163-1175., 2019, 15 |
16 |
2017 |
M Hayashi, T Aoshi, Y Haseda, K Kobiyama, E Wijaya, N Nakatsu, ... |
Advax, a delta inulin microparticle, potentiates in-built adjuvant property of co-administered vaccines |
EBIOMEDICINE, 2017, 15, 127-136 |
15 |
2017 |
S Sakakibara, T Arimori, K Yamashita, H Jinzai, D Motooka, S Nakamura, ... |
Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus |
SCIENTIFIC REPORTS, 2017, 7, 1-14 |
14 |
2014 |
T Hirano, Y Iesato, Y Toriyama, A Imai, T Murata |
Detection of fovea-threatening diabetic macular edema by optical coherence tomography to maintain good vision by prophylactic treatment |
OPHTHALMIC RESEARCH, 2014, 52, 65-73 |
14 |
2009 |
R Apostolov, Y Yonezawa, DM Standley, G Kikugawa, Y Takano, ... |
Membrane attachment facilitates ligand access to the active site in monoamine oxidase A |
BIOCHEMISTRY, 2009, 48, 5864-5873 |
13 |
2010 |
DM Standley, R Yamashita, AR Kinjo, H Toh, H Nakamura |
SeSAW: balancing sequence and structural information in protein functional mapping |
BIOINFORMATICS, 2010, 26, 1258-1259 |
12 |
2007 |
J Liao, K Zhuo, S Yu, X Li, D Li |
Bursaphelenchus uncispicularis n. sp.(Nematoda: Parasitaphelenchidae) from Pinus yunnanensis in China |
NEMATOLOGY, 2007, 9, 237-242 |
12 |
2012 |
A Vandenbon, Y Kumagai, S Akira, DM Standley |
A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription |
BMC GENOMICS 13 (S7), S, 2012, 11 |
11 |
2012 |
S Liang, C Zhang, J Sarmiento, DM Standley |
Protein loop modeling with optimized backbone potential functions |
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8, 1820-1827 |
11 |
2019 |
D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... |
Repertoire builder: high-throughput structural modeling of B and T cell receptors |
MOLECULAR SYSTEMS DESIGN & ENGINEERING, 2019, 4, 761-768 |
10 |
2019 |
D Yamasoba, K Sato, T Ichinose, T Imamura, L Koepke, S Joas, E Reith, ... |
N4BP1 restricts HIV-1 and its inactivation by MALT1 promotes viral reactivation |
NATURE MICROBIOLOGY, 2019, 4, 1532-1544 |
9 |
2011 |
S Teraguchi, Y Kumagai, A Vandenbon, S Akira, DM Standley |
Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations |
PHYSICAL REVIEW E, 2011, 84, 62903-62903 |
9 |
2010 |
S Teraguchi, A Patil, DM Standley |
Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins |
BMC BIOINFORMATICS 11 (S7), S, 2010, 7 |
9 |
2008 |
DM Standley, H Toh, H Nakamura |
Functional annotation by sequence‐weighted structure alignments: Statistical analysis and case studies from the Protein 3000 structural genomics project in Japan |
PROTEINS: STRUCTURE, FUNCTION, AND BIOINFORMATICS, 2008, 72, 1333-1351 |
9 |
2012 |
A Patil, S Teraguchi, H Dinh, K Nakai, DM Standley |
Functional annotation of intrinsically disordered domains by their amino acid content using IDD navigator |
BIOCOMPUTING, 2012, 2012, 164-175 |
7 |
2011 |
S Liang, C Zhang, DM Standley |
Protein loop selection using orientation‐dependent force fields derived by parameter optimization |
PROTEINS: STRUCTURE, FUNCTION, AND BIOINFORMATICS, 2011, 79, 2260-2267 |
7 |
2010 |
RJ Milewski, Y Kumagai, K Fujita, DM Standley, NI Smith |
Automated processing of label-free Raman microscope images of macrophage cells with standardized regression for high-throughput analysis |
IMMUNOME RESEARCH, 2010, 6, 1-10 |
7 |
2019 |
AA Koesoema, Y Sugiyama, Z Xu, DM Standley, M Senda, T Senda, ... |
Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain |
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 103 (23-24), 2019, 9543-9553 |
6 |
2019 |
T Mino, N Iwai, M Endo, K Inoue, K Akaki, F Hia, T Uehata, T Emura, ... |
Translation-dependent unwinding of stem–loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs |
NUCLEIC ACIDS RESEARCH, 2019, 47, 8838-8859 |
6 |
2017 |
J Hirano, T Okamoto, Y Sugiyama, T Suzuki, S Kusakabe, M Tokunaga, ... |
Characterization of SPP inhibitors suppressing propagation of HCV and protozoa |
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 114 (50), E10782-, 2017, 10791 |
5 |
2017 |
B Nosirov, J Billaud, A Vandenbon, D Diez, E Wijaya, KJ Ishii, ... |
Mapping circulating serum miRNAs to their immune-related target mRNAs |
ADVANCES AND APPLICATIONS IN BIOINFORMATICS AND CHEMISTRY: AABC, 2017, 10, 1-1 |
5 |
2012 |
DM Standley, M van der Giezen |
Modeling the alternative oxidase from the human pathogen Blastocystis using automated hybrid structural template assembly |
RES. REP. BIOCHEM, 2012, 2, 1-8 |
5 |
2019 |
AA Koesoema, Y Sugiyama, KT Sriwong, Z Xu, S Verina, DM Standley, ... |
Reversible control of enantioselectivity by the length of ketone substituent in biocatalytic reduction |
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 103 (23-24), 2019, 9529-9541 |
4 |
2015 |
D Hall, S Li, K Yamashita, R Azuma, JA Carver, DM Standley |
RNA–LIM: A novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure |
ANALYTICAL BIOCHEMISTRY, 2015, 472, 52-61 |
4 |
2020 |
AA Koesoema, DM Standley, T Senda, T Matsuda |
Impact and relevance of alcohol dehydrogenase enantioselectivities on biotechnological applications |
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2020, 1-13 |
3 |
2019 |
Z Xu, S Li, J Rozewicki, K Yamashita, S Teraguchi, T Inoue, R Shinnakasu, ... |
Functional clustering of B cell receptors using sequence and structural features |
MOLECULAR SYSTEMS DESIGN & ENGINEERING, 2019, 4, 769-778 |
3 |
2014 |
D Hall, S Li, K Yamashita, R Azuma, JA Carver, DM Standley |
A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein |
BIOPHYSICAL CHEMISTRY, 2014, 190, 50-55 |
3 |
2013 |
A Vandenbon, Y Kumagai, S Teraguchi, KM Amada, S Akira, DM Standley |
A Parzen window-based approach for the detection of locally enriched transcription factor binding sites |
BMC BIOINFORMATICS, 2013, 14, 26-26 |
3 |
2011 |
Y Yonezawa, DM Standley, H Nakamura |
Degree of pyramidality governs the height and peak position of the free-energy-barrier for the cis–trans isomerization of N-Methylacetamide |
CHEMICAL PHYSICS LETTERS 503 (1-3), 2011, 139-144 |
3 |
2020 |
H Metwally, T Tanaka, S Li, G Parajuli, S Kang, H Hanieh, S Hashimoto, ... |
Noncanonical STAT1 phosphorylation expands its transcriptional activity into promoting LPS-induced IL-6 and IL-12p40 production |
SCIENCE SIGNALING, 2020, 13 |
2 |
2020 |
K Fukushima, T Satoh, F Sugihara, Y Sato, T Okamoto, Y Mitsui, S Yoshio, ... |
Dysregulated Expression of the Nuclear Exosome Targeting Complex Component Rbm7 in Nonhematopoietic Cells Licenses the Development of Fibrosis |
IMMUNITY 52 (3), 542-556., 2020, 13 |
2 |
2020 |
AA Koesoema, DM Standley, S Ohshima, M Tamura, T Matsuda |
Control of enantioselectivity in the enzymatic reduction of halogenated acetophenone analogs by substituent positions and sizes |
TETRAHEDRON LETTERS, 2020, 151820 |
2 |
2020 |
AA Koesoema, DM Standley, M Tamura, T Matsuda |
Access to both enantiomers of substituted 2-tetralol analogs by a highly enantioselective reductase |
TETRAHEDRON LETTERS, 2020, 151682 |
2 |
2020 |
Y Lee, H Yamada, A Pradipta, JS Ma, M Okamoto, H Nagaoka, ... |
Initial phospholipid-dependent Irgb6 targeting to Toxoplasma gondii vacuoles mediates host defense |
LIFE SCIENCE ALLIANCE, 2020, 3 |
2 |
2019 |
H Fukuda, S Li, L Sardo, JL Smith, K Yamashita, AD Sarca, K Shirakawa, ... |
Structural Determinants of the APOBEC3G N-terminal domain for HIV-1 RNA association |
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2019, 9, 129-129 |
2 |
2019 |
S Li, J Wilamowski, S Teraguchi, FJ van Eerden, J Rozewicki, A Davila, ... |
Structural modeling of lymphocyte receptors and their antigens |
IN VITRO DIFFERENTIATION OF T-CELLS, 2019, 207-229 |
2 |
2014 |
A Vandenbon, S Teraguchi, O Takeuchi, Y Suzuki, DM Standley |
Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation |
BMC GENOMICS 15 (S10), S, 2014, 4 |
2 |
2011 |
AR Kinjo, Y Kumagai, H Dinh, O Takeuchi, DM Standley |
Functional characterization of protein domains common to animal viruses and mouse |
BMC GENOMICS, 2011, 12, 1-10 |
2 |
2013 |
E KANAMORI, Y MURAKAMI, JOY SARMIENTO, S LIANG, ... |
PREDICTION OF PROTEIN-PROTEIN COMPLEX STRUCTURES |
BIOMOLECULAR FORMS AND FUNCTIONS: A CELEBRATION OF 50 YEARS OF THE …, 2013 |
1 |
2008 |
DM Standley, AR Kinjo, M Lis, M van der Giezen, H Nakamura |
Structure-based functional annotation of protein sequences guided by comparative models |
THE SECOND INTERNATIONAL SYMPOSIUM ON OPTIMIZATION AND SYSTEMS BIOLOGY …, 2008 |
1 |
2020 |
S Teraguchi, DS Saputri, MA Llamas-Covarrubias, A Davila, D Diez, ... |
Methods for sequence and structural analysis of B and T cell receptor repertoires |
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2020 |
0 |
2020 |
C Ono, T Fukuhara, S Li, J Wang, A Sato, T Izumi, Y Fauzyah, ... |
Various miRNAs compensate the role of miR-122 on HCV replication |
PLOS PATHOGENS, 2020, 16, 1008308 |
0 |
2020 |
DS Saputri, S Li, FJ Van Eerden, J Rozewicki, Z Xu, HS Ismanto, A Davila, ... |
Flexible, functional and familiar: characteristics of SARS-CoV-2 spike protein evolution |
FRONTIERS IN MICROBIOLOGY, 2020, 11, 2112-2112 |
0 |
2020 |
C Ono, T Fukuhara, S Li, J Wang, A Sato, T Izumi, Y Fauzyah, ... |
Various miRNAs are involved in efficient HCV replication |
BIORXIV, 2020 |
0 |
2019 |
AA Koesoema, Y Sugiyama, Z Xu, DM Standley, M Senda, T Senda, ... |
Correction to: Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain. |
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 103 (23-24), 2019, 9555 |
0 |
2019 |
DM Standley, JDO Nieri, S Li, D Schritt, K Yamashita |
Immunological entity clustering software |
US PATENT APP. 16/333,875, 2019 |
0 |
2017 |
D Schritt, K Katoh, S Li, DM Standley |
Modeling Biocatalysts |
FUTURE DIRECTIONS IN BIOCATALYSIS, 2017, 385-398 |
0 |
2016 |
K Takeda, S Sakakibara, D Motooka, S Nakamura, K Yamashita, ... |
Identification of Nasal Resident Bacteria as Causative Allergens in Eosinophilic Chronic Rhinosinusitis |
EUROPEAN JOURNAL OF IMMUNOLOGY, 2016, 46, 1114-1114 |
0 |
2016 |
S Sakakibara, T Arimori, K Yamashita, H Jinzai, D Motooka, S Nakamura, ... |
Antigen-specific maturation of autoantibodies in systemic lupus erythematosus |
EUROPEAN JOURNAL OF IMMUNOLOGY, 2016, 46, 313-314 |
0 |
2014 |
DM Standley |
2SCP-07 Intrinsic disorder mediates cooperative signal transduction in STIM1 (構造バイオインフォマティクスによる蛋白質機能予測・解析, シンポジウム, 第 52 回日本生物物理学会年会 (2014 年度)) |
生物物理 54 (1), S, 2014, 133 |
0 |
2013 |
Y Furukawa, S Teraguchi, T Ikegami, Y Suenari, O Dagliyan, L Jin, D Hall, ... |
Calcium-dependent Unfolding of the STIM1 EF-SAM Domain Drives Cooperative Calcium Influx: 362 |
PROTEIN SCIENCE, 2013, 22, 141-142 |
0 |
2013 |
AP Hutchins, D Diez, D Miranda-Saavedra |
The IL-10/STAT3-mediated anti-inflammatory response: recent developments and future challenges |
BRIEFINGS IN FUNCTIONAL GENOMICS, 2013, 12, 489-498 |
213 |
2016 |
W Nakai, T Yoshida, D Diez, Y Miyatake, T Nishibu, N Imawaka, K Naruse, ... |
A novel affinity-based method for the isolation of highly purified extracellular vesicles |
SCIENTIFIC REPORTS, 2016, 6, 33935-33935 |
131 |
2010 |
B Morte, A Ceballos, D Diez, C Grijota-Martínez, AM Dumitrescu, ... |
Thyroid hormone-regulated mouse cerebral cortex genes are differentially dependent on the source of the hormone: a study in monocarboxylate transporter-8-and deiodinase-2 … |
ENDOCRINOLOGY, 2010, 151, 2381-2381 |
105 |
2009 |
CE Wheelock, ÅM Wheelock, S Kawashima, D Diez, M Kanehisa, ... |
Systems biology approaches and pathway tools for investigating cardiovascular disease |
MOL. BIOSYST., 2009, 5, 588-602 |
103 |
2010 |
D Diez, ÅM Wheelock, S Goto, JZ Haeggström, G Paulsson-Berne, ... |
The use of network analyses for elucidating mechanisms in cardiovascular disease |
MOL. BIOSYST., 2010, 6, 289-304 |
92 |
2015 |
I Bahrini, J Song, D Diez, R Hanayama |
Neuronal exosomes facilitate synaptic pruning by up-regulating complement factors in microglia |
SCIENTIFIC REPORTS, 2015, 5, 7989-7989 |
88 |
2008 |
D Diez, C Grijota-Martinez, P Agretti, G De Marco, M Tonacchera, ... |
Thyroid hormone action in the adult brain: gene expression profiling of the effects of single and multiple doses of triiodo-L-thyronine in the rat striatum |
ENDOCRINOLOGY, 2008, 149, 3989-3989 |
75 |
2010 |
B Morte, D Díez, E Ausó, MM Belinchón, P Gil-Ibáñez, C Grijota-Martínez, ... |
Thyroid hormone regulation of gene expression in the developing rat fetal cerebral cortex: prominent role of the Ca2+/calmodulin-dependent protein kinase IV pathway |
ENDOCRINOLOGY, 2010, 151, 810-810 |
69 |
2013 |
AP Hutchins, D Diez, Y Takahashi, S Ahmad, R Jauch, ML Tremblay, ... |
Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions |
NUCLEIC ACIDS RESEARCH, 2013, 41, 2155-70 |
68 |
2011 |
C Grijota-Martínez, D Díez, G Morreale de Escobar, J Bernal, B Morte |
Lack of action of exogenously administered T3 on the fetal rat brain despite expression of the monocarboxylate transporter 8 |
ENDOCRINOLOGY, 2011, 152, 1713-1721 |
68 |
2013 |
AP Hutchins, S Liu, D Diez, D Miranda-Saavedra |
The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes |
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30, 1172-1187 |
56 |
2014 |
D Diez, A Agustí, CE Wheelock |
Network analysis in the investigation of chronic respiratory diseases. From basics to application |
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2014, 190, 981-988 |
46 |
2014 |
R Stojnic, D Diez |
PWMEnrich: PWM enrichment analysis |
R PACKAGE VERSION 4 (0), 10., 2014, 18129 |
30 |
2011 |
D Díez, F Sanchez-Jimenez, JAG Ranea |
Evolutionary expansion of the Ras switch regulatory module in eukaryotes |
NUCLEIC ACIDS RESEARCH, 2011, 39, 5526-5537 |
30 |
2013 |
AP Hutchins, D Diez, D Miranda-Saavedra |
Genomic and computational approaches to dissect the mechanisms of STAT3’s universal and cell type-specific functions |
JAK-STAT, 2013, 2, 25097 |
26 |
2014 |
D Diez, AP Hutchins, D Miranda-Saavedra |
Systematic identification of transcriptional regulatory modules from protein–protein interaction networks |
NUCLEIC ACIDS RESEARCH 42 (1), E6-, 2014, 6 |
25 |
2012 |
D Diez, S Goto, JV Fahy, DJ Erle, PG Woodruff, ÅM Wheelock, ... |
Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics |
BMC MEDICAL GENOMICS, 2012, 5, 27-27 |
23 |
2007 |
D Diez, R Alvarez, A Dopazo |
Codelink: an R package for analysis of GE healthcare gene expression bioarrays |
BIOINFORMATICS, 2007, 23, 1168-1168 |
23 |
2008 |
CN Hayes, D Diez, N Joannin, W Honda, M Kanehisa, M Wahlgren, ... |
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation |
BIOINFORMATICS, 2008, 24, 2564-2565 |
21 |
2009 |
L Folkersen, D Diez, CE Wheelock, JZ Haeggström, S Goto, P Eriksson, ... |
GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome |
BIOINFORMATICS, 2009, 25, 1978-1979 |
13 |
2010 |
D Diez, N Hayes, N Joannin, J Normark, M Kanehisa, M Wahlgren, ... |
varDB: A database of antigenic variant sequences—Current status and future prospects |
ACTA TROPICA, 2010, 114, 144-151 |
4 |
2016 |
A Bueno, I Morilla, D Diez, AA Moya-Garcia, J Lozano, JAG Ranea |
Exploring the interactions of the RAS family in the human protein network and their potential implications in RAS-directed therapies |
ONCOTARGET, 2016, 7, 75810-75810 |
3 |
2011 |
GM Kirwan, D Diez, JZ Haeggström, S Goto, CE Wheelock |
Systems Biology Approaches for Investigating the Relationship Between Lipids and Cardiovascular Disease |
CURRENT CARDIOVASCULAR RISK REPORTS, 2011, 1-10 |
2 |
2009 |
CN Hayes, D Diez, N Joannin, M Kanehisa, M Wahlgren, CE Wheelock, ... |
Tools for investigating mechanisms of antigenic variation: new extensions to varDB |
GENOME INFORMATICS 2009: GENOME INFORMATICS SERIES VOL., 2009, 23, 46-59 |
1 |
2020 |
A Vandenbon, D Diez |
A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data |
NATURE COMMUNICATIONS, 2020, 11, 1-10 |
0 |
2015 |
D Diez |
rTRMui: a shiny user interface for the identification of transcriptional regulatory modules |
, 2015 |
0 |
2014 |
D Diez |
rTRM: an R package for the identification of transcription regulatory modules (TRMs) |
, 2014 |
0 |
2013 |
D Diez |
Codelink Legacy: the old Codelink class |
, 2013 |
0 |
2014 |
HI Ingólfsson, MN Melo, FJ Van Eerden, C Arnarez, CA Lopez, ... |
Lipid organization of the plasma membrane |
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136, 14554-14559 |
477 |
2013 |
CA López, Z Sovova, FJ van Eerden, AH de Vries, SJ Marrink |
Martini force field parameters for glycolipids |
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9, 1694-1708 |
128 |
2015 |
FJ van Eerden, DH de Jong, AH de Vries, TA Wassenaar, SJ Marrink |
Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations |
BIOCHIMICA ET BIOPHYSICA ACTA (BBA)-BIOMEMBRANES, 2015, 1848, 1319-1330 |
92 |
2017 |
FJ Van Eerden, MN Melo, PWJM Frederix, X Periole, SJ Marrink |
Exchange pathways of plastoquinone and plastoquinol in the photosystem II complex |
NATURE COMMUNICATIONS, 2017, 8, 1-8 |
40 |
2017 |
B Liu, C Åberg, FJ van Eerden, SJ Marrink, B Poolman, AJ Boersma |
Design and properties of genetically encoded probes for sensing macromolecular crowding |
BIOPHYSICAL JOURNAL, 2017, 112, 1929-1939 |
31 |
2017 |
FJ Van Eerden, T Van Den Berg, PWJM Frederix, DH De Jong, X Periole, ... |
Molecular dynamics of photosystem II embedded in the thylakoid membrane |
THE JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121, 3237-3249 |
25 |
2017 |
FJ Van Eerden, MN Melo, PWJM Frederix, SJ Marrink |
Prediction of thylakoid lipid binding sites on photosystem II |
BIOPHYSICAL JOURNAL, 2017, 113, 2669-2681 |
17 |
2018 |
R Friedman, S Khalid, C Aponte-Santamaría, E Arutyunova, M Becker, ... |
Understanding conformational dynamics of complex lipid mixtures relevant to biology |
THE JOURNAL OF MEMBRANE BIOLOGY 251 (5-6), 2018, 609-631 |
14 |
2016 |
FJ van Eerden |
Photosynthesis in Silico: Simulations of Photosystem II and the Thylakoid Membrane |
RIJKSUNIVERSITEIT GRONINGEN, 2016 |
0 |
2014 |
FJ van Eerden, DH de Jong, X Periole, SJ Marrink |
Simulation of Photosystem Ii Dynamics in the Thylakoid Membrane |
BIOPHYSICAL JOURNAL 106 (2), 181A, 2014 |
0 |
2019 |
K Katoh, J Rozewicki, KD Yamada |
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization |
BRIEFINGS IN BIOINFORMATICS, 2019, 20, 1160-1166 |
1262 |
2008 |
K Katoh, H Toh |
Recent developments in the MAFFT multiple sequence alignment program |
BRIEFINGS IN BIOINFORMATICS, 2008, 9, 286-298 |
3150 |
2009 |
K Katoh, G Asimenos, H Toh |
Multiple alignment of DNA sequences with MAFFT |
BIOINFORMATICS FOR DNA SEQUENCE ANALYSIS, 2009, 39-64 |
1064 |
2010 |
K Katoh, H Toh |
Parallelization of the MAFFT multiple sequence alignment program |
BIOINFORMATICS, 2010, 26, 1899-1900 |
605 |
2008 |
K Katoh, H Toh |
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework |
BMC BIOINFORMATICS, 2008, 9, 212-212 |
527 |
2015 |
I Sela, H Ashkenazy, K Katoh, T Pupko |
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters |
NUCLEIC ACIDS RESEARCH 43 (W1), W7-W, 2015, 14 |
359 |
2013 |
S Kuraku, CM Zmasek, O Nishimura, K Katoh |
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity |
NUCLEIC ACIDS RESEARCH 41 (W1), W22-W, 2013, 28 |
224 |
2018 |
T Nakamura, KD Yamada, K Tomii, K Katoh |
Parallelization of MAFFT for large-scale multiple sequence alignments |
BIOINFORMATICS, 2018, 1, 3-3 |
176 |
2016 |
KD Yamada, K Tomii, K Katoh |
Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees |
BIOINFORMATICS, 2016, 32, 3246-3251 |
145 |
2012 |
K Katoh, MC Frith |
Adding unaligned sequences into an existing alignment using MAFFT and LAST |
BIOINFORMATICS, 2012, 28, 3144-3146 |
144 |
2007 |
K Katoh, H Toh |
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences |
BIOINFORMATICS, 2007, 23, 372-374 |
90 |
2009 |
CB Do, K Katoh |
Protein multiple sequence alignment |
FUNCTIONAL PROTEOMICS, 2009, 379-413 |
84 |
2008 |
M Koyanagi, T Nagata, K Katoh, S Yamashita, F Tokunaga |
Molecular evolution of arthropod color vision deduced from multiple opsin genes of jumping spiders |
JOURNAL OF MOLECULAR EVOLUTION, 2008, 66, 130-137 |
59 |
2019 |
J Sone, S Mitsuhashi, A Fujita, T Mizuguchi, K Hamanaka, K Mori, H Koike, ... |
Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease |
NATURE GENETICS, 2019, 51, 1215-1221 |
49 |
2007 |
G Sasaki, K Katoh, N Hirose, H Suga, K Kuma, T Miyata, ZH Su |
Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: extensive gene … |
GENE 401 (1-2), 2007, 135-144 |
42 |
2015 |
N Fukushima, S Ishii, T Tsujiuchi, N Kagawa, K Katoh |
Comparative analyses of lysophosphatidic acid receptor-mediated signaling |
CELLULAR AND MOLECULAR LIFE SCIENCES, 2015, 72, 2377-2394 |
27 |
2020 |
H Nakamura, H Doi, S Mitsuhashi, S Miyatake, K Katoh, MC Frith, T Asano, ... |
Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS |
JOURNAL OF HUMAN GENETICS, 2020, 65, 475-480 |
3 |
2014 |
Y Morimoto, S Ishii, J Ishibashi, K Katoh, T Tsujiuchi, N Kagawa, ... |
Functional lysophosphatidic acid receptors expressed in Oryzias latipes |
GENE, 2014, 551, 189-200 |
3 |
2020 |
M Lei, D Liang, Y Yang, S Mitsuhashi, K Katoh, N Miyake, MC Frith, L Wu, ... |
Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer–Giedion syndrome and Cornelia de Lange syndrome-4 |
JOURNAL OF HUMAN GENETICS, 2020, 1-8 |
2 |
2014 |
K Yamada, K Katoh, K Tomii |
1P267 application of novel amino acid substitution matrix, MIQS, to the mafft multiple sequence aligner (22c. Bioinformatics: Comparative genomics, poster, the 52nd annual … |
SEIBUTSU BUTSURI 54 (SUPPLEMENT1-2), S, 2014, 185 |
1 |
2020 |
S Mitsuhashi, S Ohori, K Katoh, MC Frith, N Matsumoto |
A pipeline for complete characterization of complex germline rearrangements from long DNA reads |
GENOME MEDICINE, 2020, 12, 1-17 |
0 |
2019 |
S Mitsuhashi, S Ohori, K Katoh, MC Frith, N Matsumoto |
A method for complete characterization of complex germline rearrangements from long DNA reads |
MEDRXIV, 2019, 19006379 |
0 |
2015 |
K Takahashi, K Katoh, N Iwabe |
Phylogenetic position of ctenophores and early evolution of metazoans |
GENES & GENETIC SYSTEMS, 2015, 90, 394-394 |
0 |
2014 |
K Takahashi, K Katoh, N Iwabe |
Molecular phylogenetic analyses of deuterostomes: evolutionary position of cephalochordates |
GENES & GENETIC SYSTEMS, 2014, 89, 312-312 |
0 |
2013 |
MA Llamas-Covarrubias, Y Valle, R Bucala, RE Navarro-Hernández, ... |
Macrophage migration inhibitory factor (MIF): genetic evidence for participation in early onset and early stage rheumatoid arthritis |
CYTOKINE, 2013, 61, 759-765 |
57 |
2012 |
MA Llamas-Covarrubias, Y Valle, RE Navarro-Hernández, ... |
Serum levels of macrophage migration inhibitory factor are associated with rheumatoid arthritis course |
RHEUMATOLOGY INTERNATIONAL, 2012, 32, 2307-2311 |
32 |
2014 |
JR Villafán-Bernal, MA Llamas-Covarrubias, JF Muñoz-Valle, ... |
A cut-point value of uncarboxylated to carboxylated index is associated with glycemic status markers in type 2 diabetes |
JOURNAL OF INVESTIGATIVE MEDICINE, 2014, 62, 33-36 |
18 |
2017 |
Z Reyes-Castillo, JF Muñoz-Valle, MA Llamas-Covarrubias |
Clinical and immunological aspects of anti-peptidylarginine deiminase type 4 (anti-PAD4) autoantibodies in rheumatoid arthritis |
AUTOIMMUNITY REVIEWS, 2017 |
9 |
2011 |
JR Padilla-Gutiérrez, CA Palafox-Sánchez, Y Valle, G Orozco-Barocio, ... |
Plasminogen activator inhibitor-1 polymorphisms (− 844 G> A and HindIII C> G) in systemic lupus erythematosus: association with clinical variables |
CLINICAL AND EXPERIMENTAL MEDICINE, 2011, 11, 11-17 |
7 |
2017 |
F Casillas-Muñoz, Y Valle, JF Muñoz-Valle, DE Martínez-Fernández, ... |
APOA1 and APOB polymorphisms and apolipoprotein concentrations as biomarkers of risk in acute coronary syndrome: Relationship with lipid-lowering therapy effectiveness. |
MEDICINA CLINICA, 2017 |
6 |
2011 |
AJL Brambila-Tapia, JI Gámez-Nava, M Salazar-Páramo, JF Muñoz-Valle, ... |
Increased CD28 serum levels are not associated with specific clinical activity in systemic lupus erythematosus |
RHEUMATOLOGY INTERNATIONAL, 2011, 31, 1321-1324 |
4 |
2014 |
LA González-Hernández, MA Llamas-Covarrubias, ... |
Nuevas terapias antirretrovirales en la infección por VIH |
REVISTA MEDICA MD, 2014, 5, 143-149 |
3 |
2017 |
IM Llamas-Covarrubias, MA Llamas-Covarrubias, E Martinez-López, ... |
Association of A-604G ghrelin gene polymorphism and serum ghrelin levels with the risk of obesity in a mexican population |
MOLECULAR BIOLOGY REPORTS, 2017, 44, 289-293 |
2 |
2015 |
IM Llamas-Covarrubias, L del Sagrario Ruiz-Solorio, ... |
Efectos de la grelina y la obestatina en la salud y la enfermedad |
REVISTA MEDICA MD, 2015, 6, 196-208 |
1 |
2010 |
JRV Bernal, JFM Valle, MAL Covarrubias, S Sanchez |
Relationship of uncarboxylated osteocalcin concentrations and ucOC/cOC index with the glycemic status in type 2 diabetes mellitus |
BONE 46, S, 2010, 56 |
1 |
2017 |
F Casillas-Muñoz, Y Valle, JF Muñoz-Valle, DE Martínez-Fernández, ... |
Polimorfismos de los genes APOA1 y APOB y concentraciones de sus apolipoproteínas como biomarcadores de riesgo en el síndrome coronario agudo: relación con la efectividad del … |
MEDICINA CLíNICA, 2017 |
0 |
2013 |
A Lopez-Iniguez, MA Llamas-Covarrubias, G Navarro-Blackaller, ... |
Rectal Plasmablastic Lymphoma in HIV/AIDS: Two Cases |
WORLD JOURNAL OF ONCOLOGY, 2013, 4, 54-54 |
0 |
2010 |
T Kloskowski, J Olkowska, A Nazlica, T Drewa |
The influence of ciprofloxacin on hamster ovarian cancer cell line CHO AA8 |
ACTA POL PHARM, 2010, 67, 345-9 |
21 |
2007 |
E Nakano, S Teraguchi, WY Wen |
Drag force, jet quenching, and an AdS/QCD model |
PHYSICAL REVIEW D, 2007, 75, 85016-85016 |
78 |
2016 |
A Vandenbon, VH Dinh, N Mikami, Y Kitagawa, S Teraguchi, N Ohkura, ... |
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system |
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 113 (17), E2393-, 2016, 2402 |
31 |
2011 |
M Ito, S Kuwakino, N Maekawa, S Moriyama, K Takahashi, K Takei, ... |
E 6 grand unified theory with three generations from heterotic string theory |
PHYSICAL REVIEW D, 2011, 83, 91703-91703 |
25 |
2016 |
Y Kumagai, A Vandenbon, S Teraguchi, S Akira, Y Suzuki |
Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs |
BMC GENOMICS, 2016, 17, 1032-1032 |
11 |
2011 |
M Ito, S Kuwakino, N Maekawa, S Moriyama, K Takahashi, K Takei, ... |
Heterotic E 6 GUTs and partition functions |
JOURNAL OF HIGH ENERGY PHYSICS, 2011, 2011, 100-100 |
11 |
2016 |
R Ikebuchi, S Teraguchi, A Vandenbon, T Honda, FHW Shand, ... |
A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response |
SCIENTIFIC REPORTS, 2016, 6, 35002-35002 |
10 |
2007 |
S Teraguchi |
Reformulation of boundary string field theory in terms of boundary state |
JOURNAL OF HIGH ENERGY PHYSICS, 2007, 2007, 17-17 |
5 |
2018 |
KZ Latt, K Honda, M Thiri, Y Hitomi, Y Omae, H Sawai, Y Kawai, ... |
Identification of a two-SNP PLA2R1 Haplotype and HLA-DRB1 Alleles as primary risk associations in idiopathic membranous nephropathy |
SCIENTIFIC REPORTS, 2018, 8, 1-9 |
4 |
2008 |
A Ishida, S Teraguchi |
On the general action of boundary (super) string field theory |
JOURNAL OF HIGH ENERGY PHYSICS, 2008, 2008, 20-20 |
3 |
2008 |
E Nakano, S Teraguchi, W Wen |
Drag force, jet quenching, and AdS/QCD |
, 2008 |
3 |
2019 |
T Yamaguchi, S Teraguchi, C Furusawa, H Machiyama, TM Watanabe, ... |
Theoretical modeling reveals that regulatory T cells increase T-cell interaction with antigen-presenting cells for stable immune tolerance |
INTERNATIONAL IMMUNOLOGY, 2019, 31, 743-753 |
2 |
2016 |
S Teraguchi, Y Kumagai |
Probabilistic Nearest Neighbor Estimation of Diffusion Constants from Single Molecular Measurement without Explicit Tracking |
ARXIV PREPRINT ARXIV:1601., 2016, 756 |
1 |
2012 |
A Ishida, S Teraguchi |
On open-closed extension of boundary string field theory |
JOURNAL OF HIGH ENERGY PHYSICS, 2012, 2012, 59-59 |
1 |
2020 |
O Gervais, K Ueno, Y Kawai, Y Hitomi, K Misawa, S Teraguchi, YY Wang, ... |
Genomic Heritabilities and Correlations of 17 Traits Related to Obesity and Associated Conditions in the Japanese Population |
G3: GENES, GENOMES, GENETICS, 2020, 10, 2221-2228 |
0 |
2018 |
S Teraguchi, Y Kumagai |
Estimation of diffusion constants from single molecular measurement without explicit tracking |
BMC SYSTEMS BIOLOGY, 2018, 12, 15-15 |
0 |
2017 |
M Tomura, R Ikebuchi, S Teraguchi, A Vandenbon, SHW Francis, ... |
A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response |
THE JOURNAL OF IMMUNOLOGY 198 (1 SUPPLEMENT), 206.14-206., 2017, 14 |
0 |
2009 |
S Li, H Li, M Li, Y Shyr, L Xie, Y Li |
Improved prediction of lysine acetylation by support vector machines |
PROTEIN AND PEPTIDE LETTERS, 2009, 16, 977-983 |
91 |
2012 |
M Fritsche, S Li, DW Heermann, PA Wiggins |
A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation |
NUCLEIC ACIDS RESEARCH, 2012, 40, 972-980 |
73 |
2013 |
S Li, DW Heermann |
Transcriptional regulatory network shapes the genome structure of Saccharomyces cerevisiae |
NUCLEUS, 2013, 4, 216-228 |
9 |
2013 |
S Li, DW Heermann |
Using chimaeric expression sequence tag as the reference to identify three-dimensional chromosome contacts |
DNA RESEARCH, 2013, 20, 45-53 |
2 |
2008 |
BK Zolman, N Martinez, A Millius, AR Adham, B Bartel |
Identification and characterization of Arabidopsis indole-3-butyric acid response mutants defective in novel peroxisomal enzymes |
GENETICS, 2008, 180, 237-251 |
128 |
2009 |
A Millius, SN Dandekar, AR Houk, OD Weiner |
Neutrophils establish rapid and robust WAVE complex polarity in an actin-dependent fashion |
CURRENT BIOLOGY, 2009, 19, 253-259 |
51 |
2012 |
A Millius, N Watanabe, OD Weiner |
Diffusion, capture and recycling of SCAR/WAVE and Arp2/3 complexes observed in cells by single-molecule imaging |
JOURNAL OF CELL SCIENCE, 2012, 125, 1165-1176 |
48 |
2009 |
A Millius, OD Weiner |
Chemotaxis in neutrophil-like HL-60 cells |
CHEMOTAXIS, 2009, 167-177 |
46 |
2010 |
A Millius, OD Weiner |
Manipulation of neutrophil-like HL-60 cells for the study of directed cell migration |
LIVE CELL IMAGING, 2010, 147-158 |
41 |
2017 |
A Millius, HR Ueda |
Systems biology derived discoveries of intrinsic clocks |
FRONTIERS IN NEUROLOGY, 2017, 8, 25-25 |
21 |
2019 |
A Millius, KL Ode, HR Ueda |
A period without PER: understanding 24-hour rhythms without classic transcription and translation feedback loops |
F1000RESEARCH, 2019, 8 |
3 |
2019 |
S Shi, A Millius, HR Ueda |
Genes and Ion Channels in the Circadian and Homeostatic Regulation of Sleep |
HANDBOOK OF BEHAVIORAL NEUROSCIENCE, 2019, 30, 181-193 |
2 |
2018 |
A Millius, H Ueda |
Rhythms: the dark side meets the light |
SCIENCE, 2018, 359, 1210-1211 |
1 |